Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
209462876.45618187713824e-090.6604839627143720.9739451069090170.649102393589359
210110630.0001725365067804450.8293529676575980.8788317789749380.576339629514151
209627110.0003500169065168430.568963270597580.858133482298890.886594141814123
209627070.0003575594251246970.5204040315092250.774449524147950.89237631348698
209627340.000364682687641620.4802629335160870.7617500904988960.890985920432673

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R20946287.CA.PASSAC=53GT0/00/00/01/00/00/10/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/01/10/00/01/10/00/01/10/01/00/00/01/11/10/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/01/10/00/00/11/10/00/01/10/00/01/10/00/00/00/01/01/11/10/01/10/00/00/00/00/00/00/00/00/00/01/00/10/00/00/00/01/10/00/00/00/01/11/10/00/00/01/00/00/01/11/11/10/00/00/00/00/01/11/10/00/01/10/00/00/01/10/00/00/00/01/11/10/01/10/00/00/00/00/10/00/00/01/10/01/00/00/00/00/00/01/00/00/00/01/0
chr3R21011063.CTGCAAATAGTC,CTGAAAATAGT,CTGCAAATAGC.PASSAC=14,6,12GT0/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/03/30/01/10/00/03/30/03/30/00/00/00/00/00/00/00/01/13/31/10/00/00/00/00/00/00/00/00/02/20/01/13/30/00/00/03/30/00/30/00/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/03/30/00/00/10/01/00/00/00/00/00/00/00/00/00/00/03/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/02/20/00/00/02/20/00/02/23/33/32/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/0
chr3R20962711.TA,AAA.PASSAC=131,1GT0/00/00/01/11/11/10/01/10/00/01/01/11/10/00/00/00/00/00/01/11/11/10/00/00/01/11/10/01/11/11/11/10/01/11/10/01/11/10/00/00/01/11/11/11/10/01/11/10/01/10/00/00/01/11/11/11/10/00/01/10/00/00/01/11/11/10/01/11/10/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/10/00/01/10/01/10/01/10/01/11/11/11/11/11/11/11/01/11/11/11/01/10/01/11/11/11/10/01/11/11/10/00/01/11/11/11/11/10/01/00/01/10/00/01/10/00/11/10/10/00/01/11/11/10/00/01/11/01/10/00/01/11/10/00/00/00/01/11/10/01/11/11/10/00/01/10/01/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/01/11/10/00/01/10/01/11/11/10/00/01/11/11/11/11/21/1
chr3R20962711.TTTAAACAAAAATAAT.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R20962707.TA.PASSAC=134GT0/00/00/01/11/11/10/01/10/00/01/00/01/10/00/00/00/10/00/01/11/11/10/00/00/01/11/10/01/11/11/11/10/01/11/10/01/11/10/00/00/01/11/11/11/10/01/11/10/01/10/00/00/01/11/11/11/10/01/11/10/00/00/01/11/11/10/01/11/00/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/10/00/01/10/01/10/01/10/01/11/11/11/11/11/11/11/01/11/11/11/01/10/01/11/11/11/10/01/11/11/10/00/01/11/11/11/11/10/01/10/01/10/00/01/10/00/11/10/10/00/01/11/11/10/00/01/11/01/10/00/01/11/10/00/00/00/01/11/10/01/11/11/10/00/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/01/11/10/00/01/10/01/11/11/10/00/01/11/11/11/11/11/1
chr3R20962734.AT.PASSAC=132GT0/00/00/01/11/11/10/01/10/00/01/01/11/10/00/00/00/00/00/01/10/01/10/00/00/01/11/10/01/11/11/11/11/10/01/10/01/11/10/00/00/01/11/11/11/10/01/11/10/01/10/00/00/01/11/11/11/10/00/01/10/00/00/01/11/11/10/01/11/00/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/10/01/11/10/01/10/01/10/01/11/10/01/11/11/11/11/01/11/11/11/01/10/01/11/11/11/10/01/11/11/10/00/01/11/11/11/11/10/01/10/01/10/00/01/10/00/11/10/11/10/01/11/11/10/00/01/11/01/10/00/01/11/10/00/00/00/01/11/10/01/11/11/10/00/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/01/11/10/00/01/10/01/11/11/10/00/01/11/11/11/11/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R20946287GCCCATTGCAGGTTTTTTATTTTGCGTCGGCTGTGTTTTTGCAACTTCATTDmelanogaster-FlyFactorSurvey-nau_SANGER_5_FBgn0002922 , Dmelanogaster-FlyFactorSurvey-rib_SANGER_5_FBgn0003254
chr3R21011063GTCGAGATAAGAATAATTTAACTGCTGCAAATAGTTGCGCTATCACCGAATNA
chr3R20962711CGCATTAATAGTTTAAACAATAATTAAACGACGAGATTCATTGAGACATTADmelanogaster-FlyFactorSurvey-bab1_FlyReg_FBgn0004870 , Dmelanogaster-FlyFactorSurvey-CG7745_SANGER_5_FBgn0033616
chr3R20962711CGCATTAATAGTTTAAACAATAATTAAACGACGAGATTCATTGAGACATTADmelanogaster-FlyFactorSurvey-CG7745_SANGER_5_FBgn0033616
chr3R20962707CAGACGCATTAATAGTTTAAACAATAATTAAACGACGAGATTCATTGAGACDmelanogaster-FlyFactorSurvey-CG7745_SANGER_5_FBgn0033616
chr3R20962734TTAAACGACGAGATTCATTGAGACATTATAATCCATTTTAATAACAATAAC