Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
189551201.68868748755957e-050.4561240641970840.1906587650966030.0360657546419576
189235358.60462238746184e-050.7852487121365040.05395594881581330.186970910097096
189434440.0001196481389789350.5633035743223410.7745798572489540.773697620038844
189454340.0001293769793136680.7516603920159480.2266435052505270.383926668355
190370550.7266483231489460.006822708055188530.0001313116250281740.379514613280406

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R18955120.AG.PASSAC=55GT0/00/00/01/10/00/10/01/00/00/00/10/00/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/10/00/01/10/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/00/01/10/00/01/11/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/00/10/00/00/00/01/10/00/00/00/00/01/10/00/00/01/11/10/00/01/10/00/11/10/00/00/01/11/10/00/01/11/10/01/11/10/00/01/11/10/01/10/00/00/00/01/11/10/10/00/10/00/00/00/00/00/00/00/11/00/00/01/10/00/00/00/00/00/00/00/00/00/10/00/00/00/01/10/00/01/11/10/01/11/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/01/10/1
chr3R18923535.TC.PASSAC=33GT0/00/00/01/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/01/11/11/10/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/11/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/00/00/00/10/00/00/00/00/00/01/10/00/10/00/01/10/00/00/00/00/00/00/01/11/10/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/00/01/10/00/00/00/00/00/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/1
chr3R18943444.CG.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R18943444.CGAC,CGG.PASSAC=86,8GT0/01/10/00/00/01/01/10/10/01/10/01/11/00/01/01/12/11/10/01/10/00/00/01/01/10/01/00/00/01/00/01/11/01/00/01/10/00/00/01/11/10/01/11/10/02/11/10/00/01/10/00/01/01/00/01/21/10/11/00/00/00/10/00/00/01/00/00/00/00/00/00/02/10/00/00/01/11/10/00/00/01/10/00/01/01/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/11/00/01/10/10/00/00/00/00/00/00/01/10/00/01/10/01/00/00/00/00/00/00/00/00/02/11/00/00/00/00/20/00/00/10/01/11/00/00/01/20/10/01/00/00/00/00/00/00/01/10/00/00/00/10/00/11/01/01/21/11/00/00/00/00/00/01/11/10/00/01/00/01/00/01/11/11/10/00/00/00/00/00/00/01/00/01/00/11/01/10/00/01/11/01/01/11/11/11/01/00/00/00/00/0
chr3R18945434.GA.PASSAC=16GT0/00/00/00/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R19037055.GT,TT.PASSAC=126,34GT1/12/10/01/10/01/11/11/11/11/11/10/00/00/01/11/10/02/11/12/22/10/01/10/01/10/01/11/11/10/00/02/11/10/02/11/12/11/11/11/12/11/12/10/00/00/02/11/10/00/01/10/01/12/10/00/12/11/21/11/10/00/01/12/11/12/10/01/10/01/20/00/00/00/00/10/01/11/12/11/10/10/01/11/11/12/11/10/01/11/10/00/01/12/11/12/11/11/11/10/01/01/11/11/10/11/12/01/10/01/11/10/00/01/00/01/10/01/10/01/11/11/11/11/12/11/11/12/11/10/00/00/00/11/10/21/10/01/11/10/01/21/00/00/01/11/10/00/00/00/00/00/00/02/11/11/10/01/11/10/00/00/01/11/11/11/11/10/01/10/01/01/12/12/10/02/10/01/10/02/10/00/01/12/11/10/01/10/00/01/10/00/02/20/01/10/00/02/11/10/00/01/10/02/11/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R18955120CGTGAAGCAGCCGTGCACGTGGGAACTGATCGACGAATCTGCAAGTAGGAGDmelanogaster-FlyFactorSurvey-HLHm7_SANGER_5_FBgn0002633 , Dmelanogaster-JASPAR_CORE-Su(H)-MA0085.1 , Su(H)_Bray
chr3R18923535GAAATTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATDmelanogaster-JASPAR_2014-STAT92E-MA0532.1
chr3R18943444TGGACAAGGGGTAAACACATGAGGCGAGGGGGGACGTGAGACTCTGATCGGDmelanogaster-FlyFactorSurvey-CG7368_SOLEXA_2.5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SANGER_2.5_FBgn0086910 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SOLEXA_2.5_FBgn0086910 , Dmelanogaster-JASPAR_2014-Mad-MA0535.1
chr3R18943444TGGACAAGGGGTAAACACATGAGGCGAGGGGGGACGTGAGACTCTGATCGGNA
chr3R18945434TTAAAATGAAAACTGTGTATGATAGCAATATTATCACGGAATACGACTTTT
chr3R19037055ACCACTTTAATCCTTTTCTTTTTTGTTCTGGCCAAGTCAAGTCGGGCGGACDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768