Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
55547857.33018022099683e-110.3126153049730350.7020716609050160.0938969298518916
55541827.92400931401234e-110.429653758556080.7344102401436790.0672946875298817
55541611.10159282432475e-100.4082436018437710.7234573902355190.0552788512751185
55548181.10159282432475e-100.4082436018437710.7234573902355190.0552788512751185
55550141.10159282432475e-100.4082436018437710.7234573902355190.0552788512751185

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L5554785.ATACA,AGAA,ATAA.PASSAC=29,5,49GT0/00/03/30/23/30/00/00/00/00/01/01/11/13/30/00/00/01/11/10/03/33/30/00/03/30/01/10/00/01/10/00/00/01/10/03/33/33/30/03/30/00/03/30/00/10/00/01/10/03/30/00/02/21/31/13/30/01/10/00/00/03/30/00/00/00/00/01/10/00/03/33/30/00/00/00/00/00/00/00/00/03/30/01/00/00/00/03/33/30/03/33/30/01/10/00/03/30/03/33/30/00/00/03/31/03/30/01/10/01/10/00/00/00/00/00/03/30/03/30/00/00/01/11/11/03/33/30/00/01/13/33/30/00/01/10/00/00/02/21/00/00/00/00/00/01/10/00/00/02/20/01/10/00/00/03/30/03/30/00/00/01/10/00/00/00/03/30/03/33/33/30/03/33/30/00/00/00/00/00/00/00/01/10/00/03/30/03/30/00/03/30/00/00/03/30/03/33/33/32/20/03/30/00/00/0
chr3L5554182.TC.PASSAC=90GT0/00/01/10/11/10/00/00/00/00/01/11/11/11/10/00/00/01/11/10/01/11/10/01/11/10/01/11/00/01/10/00/00/01/10/01/11/11/10/01/10/00/01/10/00/00/00/01/10/01/10/00/01/11/11/11/10/01/10/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/00/10/00/01/10/00/00/01/10/01/10/00/00/01/11/10/01/11/10/01/10/00/01/10/01/11/10/00/00/01/11/11/10/01/10/01/10/00/00/00/01/10/01/10/01/10/00/00/01/11/11/01/11/10/00/11/11/11/10/00/01/10/00/01/11/11/10/10/00/00/00/01/10/00/00/01/10/01/10/00/00/01/10/01/10/01/10/01/10/00/00/00/01/10/01/11/11/10/01/11/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/01/10/00/00/01/10/01/11/11/11/10/01/10/00/00/0
chr3L5554161.GA.PASSAC=89GT0/00/01/10/11/10/00/00/00/00/01/11/11/11/10/00/00/01/11/10/01/11/10/01/11/10/01/10/10/01/10/00/00/01/10/01/11/11/10/01/10/00/01/10/00/00/00/01/10/01/10/00/01/11/11/11/10/01/10/00/00/01/10/00/00/00/00/01/10/00/01/11/00/00/00/10/00/01/10/00/00/01/10/01/10/00/00/01/11/10/01/11/10/01/10/00/01/10/01/11/10/00/00/01/11/11/10/01/10/01/10/00/00/00/01/10/01/10/01/10/00/00/01/11/11/01/11/10/00/01/11/11/10/00/01/10/00/01/11/11/10/10/00/00/00/01/10/00/00/01/10/01/10/00/00/01/10/01/10/01/10/01/10/00/00/00/01/10/01/11/11/10/01/11/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/01/10/00/00/01/10/01/11/11/11/10/01/10/00/00/0
chr3L5554811.TGATTTTAT.PASSAC=4GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L5554818.AAATTTAATTAATTTTTGATAGATGGCTAAA,AAAATTAATTAATTTTTGATAGATGCCTAA,AAATTTAATTAATTTTTGATAGATGCCTAA,AAATTTGATTAATTTTTGATAGATGCCTAA,AAATTTGATTCATTTTTGATAGATGCCTAA.PASSAC=50,4,16,1,16GT0/00/01/10/31/00/00/00/00/00/05/50/05/51/10/00/00/03/35/50/01/11/10/01/11/10/05/55/00/02/20/00/00/05/50/01/11/11/00/01/10/00/01/10/00/00/00/03/30/01/10/00/03/35/15/51/00/05/50/00/00/01/10/00/00/00/00/05/50/00/01/11/10/00/00/00/00/03/30/00/00/01/10/05/50/00/00/01/11/10/01/11/10/02/20/00/01/00/01/11/10/00/00/01/12/21/10/03/30/05/50/00/00/00/03/30/01/10/01/10/00/00/05/53/32/21/11/10/00/03/31/11/10/00/03/30/00/00/03/35/40/00/00/00/00/03/30/00/00/03/30/05/50/00/00/01/00/01/00/03/30/05/50/00/00/00/01/10/01/11/01/00/01/11/00/00/00/00/00/00/00/00/03/30/00/01/00/01/00/00/01/10/00/00/01/10/01/11/11/13/30/01/10/00/00/0
chr3L5555014.TA.PASSAC=90GT0/00/01/10/11/10/00/00/00/00/01/11/11/11/10/00/00/01/11/10/01/11/10/01/11/10/01/11/00/01/00/00/00/01/10/01/11/11/10/01/10/00/01/10/00/00/00/01/10/01/10/00/01/11/11/11/10/01/10/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/01/11/11/11/11/10/01/10/00/01/10/01/11/10/00/00/01/11/11/10/01/10/01/10/00/00/00/01/10/01/10/01/10/00/00/01/11/11/01/11/10/00/01/11/11/10/00/01/10/00/01/11/11/00/10/00/00/00/01/10/00/00/01/10/01/11/10/00/01/10/01/10/01/10/01/10/00/00/00/01/10/01/11/11/10/01/11/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/01/10/00/00/01/10/01/11/11/11/10/01/10/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L5554785ACAGTAAATTAAACAATTTAGATTATACATTTTTTAAATTAAGAAATAAATNA
chr3L5554182GAAGACCAGTACTCCGATGGCAGATACCAACATCCCGATGAAGGCCAAAGTDmelanogaster-FlyFactorSurvey-CG4360_F1.3_SANGER_2.5_FBgn0038787
chr3L5554161ATCCGGACCAGCACACAGGATGAAGACCAGTACTCCGATGGCAGATACCAA
chr3L5554811ACATTTTTTAAATTAAGAAATAAATGATTTTAAATTTAATTAATTTTTGATNA
chr3L5554818TTAAATTAAGAAATAAATGATTTTAAATTTAATTAATTTTTGATAGATGGCNA
chr3L5555014TCAATCGTTCCCCTAATTAAGGGCTGCCACAGCCTTGTGGGCGGCATCATCDmelanogaster-FlyFactorSurvey-CG7745_SANGER_5_FBgn0033616