Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
34713191.27960890370922e-090.6693135310759490.978539012917550.737130394261348
34717151.63785248633798e-060.5377313994705170.7630358311573990.871867137380972
34726681.87578182128128e-060.28821628500010.7342545456976970.510758565150922
34855890.6940804009416940.002667317200192720.5759806268588432.57095546218613e-05
34270570.9328747459569780.02525453466735560.04404420699186298.70658917217803e-05

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L3471319.CT.PASSAC=86GT0/01/11/10/00/00/01/10/00/01/10/01/10/01/10/01/10/00/00/01/11/10/00/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/01/11/10/01/11/10/00/00/00/01/11/10/00/01/10/01/11/11/10/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/11/11/11/11/11/11/11/10/01/01/10/00/00/01/11/11/10/00/00/00/01/10/01/00/00/00/00/00/01/10/00/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/01/11/11/11/10/01/11/11/11/10/00/00/01/10/00/01/10/00/00/00/01/10/01/10/01/11/10/00/01/10/01/00/00/00/00/01/10/00/00/00/01/10/01/11/10/01/10/01/11/11/11/11/11/11/10/00/00/00/01/11/10/00/01/11/10/00/01/11/11/11/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/01/0
chr3L3471715.GA.PASSAC=81GT0/00/01/10/00/00/01/10/00/01/10/00/00/01/10/01/10/00/00/01/11/10/00/00/00/01/10/00/00/00/00/01/11/10/01/11/10/00/01/11/10/01/11/10/00/00/00/01/10/00/00/01/10/01/11/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/01/11/11/11/10/00/01/10/00/01/11/10/01/10/00/00/00/01/10/01/10/00/00/00/00/01/10/00/00/01/11/11/11/10/00/00/00/00/01/11/10/00/00/00/01/11/11/10/01/11/11/11/10/00/00/01/10/00/01/10/00/00/00/01/10/11/10/01/11/10/00/01/10/01/10/00/00/00/01/10/00/00/00/01/11/11/11/10/01/10/01/11/11/11/01/11/11/10/00/00/00/00/01/10/00/01/11/10/00/01/11/11/11/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/01/0
chr3L3472668.AG,T.PASSAC=9,78GT1/12/22/20/00/00/02/20/00/02/20/02/00/00/00/02/20/00/02/22/22/20/00/02/20/02/20/00/00/00/00/01/10/01/10/02/20/00/01/12/20/02/22/20/00/02/20/02/20/00/00/02/20/02/22/22/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/22/20/00/22/22/22/22/20/00/02/20/00/00/02/22/22/20/00/00/01/12/20/02/20/00/00/02/20/02/20/00/02/22/20/00/02/20/00/00/00/00/02/22/20/00/00/02/22/22/22/20/02/22/22/22/20/00/00/02/20/00/02/20/00/00/00/01/10/02/20/02/22/22/20/02/20/02/20/00/00/00/02/20/00/00/00/02/20/01/12/20/02/20/02/22/22/22/22/22/20/00/00/00/00/00/02/20/00/02/22/20/00/02/22/22/22/20/02/22/20/00/01/10/01/10/00/00/00/02/20/00/00/02/0
chr3L3485589.AAAAAAA,AA,AAA.PASSAC=3,110,10GT2/00/02/00/12/00/20/20/20/20/00/22/10/20/00/20/20/00/00/20/20/00/20/20/20/20/22/20/00/30/00/20/02/00/00/00/20/20/00/00/00/00/00/20/20/20/00/00/20/00/00/00/20/00/00/20/20/20/00/20/20/02/30/00/00/20/20/20/30/20/22/00/00/20/00/00/00/00/00/20/00/20/00/00/20/20/00/00/00/20/30/00/20/00/02/00/20/30/20/00/20/20/20/00/20/02/20/00/30/21/22/00/20/30/20/20/20/22/00/00/20/00/02/00/02/00/20/00/00/00/30/20/20/00/20/20/00/22/00/00/20/00/20/20/20/00/00/20/00/00/20/00/00/00/20/00/00/20/20/20/00/00/20/20/20/00/20/20/20/20/20/00/22/30/20/20/20/20/20/00/20/00/00/00/00/00/20/20/20/20/20/00/00/00/00/00/20/20/30/00/20/00/00/00/20/0
chr3L3427057.CA,AAGAAA.PASSAC=14,3GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/10/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/02/20/00/00/10/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/02/10/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/02/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/10/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L3427057.CCA,CAGAAAAA.PASSAC=13,2GT0/00/00/00/10/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/01/00/00/00/10/00/00/00/20/00/02/00/00/00/00/00/00/00/00/00/00/01/00/00/01/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L3471319TTTATACACAGGCAGTGATGGGCGCCCGGCTTGTTTTGCGCCAGAATCGAC
chr3L3471715AGTGCTTTTAAATAAATGCATTTCGCGTGCCAGTTGCTTAGGATTTTGCTADmelanogaster-FlyFactorSurvey-E(spl)_SANGER_5_FBgn0000591 , Dmelanogaster-FlyFactorSurvey-gce_Clk_SANGER_5_FBgn0023076 , Dmelanogaster-FlyFactorSurvey-gce_Clk_SANGER_5_FBgn0261703 , Dmelanogaster-FlyFactorSurvey-Hey_SANGER_5_FBgn0027788 , Dmelanogaster-FlyFactorSurvey-HLHm3_SANGER_5_FBgn0002609 , Dmelanogaster-FlyFactorSurvey-HLHm7_SANGER_5_FBgn0002633 , Dmelanogaster-FlyFactorSurvey-HLHmbeta_SANGER_10_FBgn0002733 , Dmelanogaster-FlyFactorSurvey-HLHmdelta_SANGER_10_FBgn0002734 , Dmelanogaster-FlyFactorSurvey-Mitf_SANGER_5_FBgn0263112 , Dmelanogaster-FlyFactorSurvey-tgo_cyc_SANGER_5_FBgn0015014 , Dmelanogaster-FlyFactorSurvey-tgo_cyc_SANGER_5_FBgn0023094
chr3L3472668AAATAGCGAGCAGTGCAGTTAGTTAAATAAAACACAGACCAAAATGTCGAC
chr3L3485589TAAAATTAAGCAAAAAAAAAAAAAAAAAAATGGAAATAATAACAACACACANA
chr3L3427057CCTCAATGAGTCAAATGCCGCCCACAAAAAAAACAGCAGCAACACGAACGGDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-lola.PO_SANGER_5_FBgn0005630 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sr_SANGER_5_FBgn0003499 , Dmelanogaster-FlyFactorSurvey-sr_SOLEXA_5_FBgn0003499
chr3L3427057CCTCAATGAGTCAAATGCCGCCCACAAAAAAAACAGCAGCAACACGAACGGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768