Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
104770157.11544676013339e-100.7034082982039670.8663648710379950.765608518242775
104776738.58655424517863e-090.5118662217148780.8327537452769870.374192610683574
104775212.37417442012727e-080.09690222579993350.09834466355159340.0218134785259352
104776871.49300300846558e-070.2031439217468130.6440063104986660.028521824211356
104773953.50892081129393e-070.06597252415116340.3741253530241910.039753806460748

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L10477015.CT.PASSAC=102GT0/00/00/00/01/11/10/00/01/10/01/10/01/10/00/00/01/10/01/11/01/11/10/01/11/10/10/00/00/01/10/00/00/01/11/10/01/11/10/00/00/01/10/01/11/11/10/01/00/01/10/01/11/01/11/11/11/11/10/01/11/11/10/00/00/00/00/00/00/00/01/00/10/01/11/10/10/00/01/11/11/11/10/00/00/01/11/10/01/10/01/10/01/10/00/01/01/11/10/00/01/11/10/00/00/00/00/10/00/11/00/00/00/01/10/00/01/10/00/01/11/10/00/01/10/00/00/01/11/10/01/10/01/11/10/01/10/01/10/01/11/10/00/01/10/00/01/10/01/11/11/10/01/11/11/10/01/11/10/00/00/00/01/10/01/11/10/00/01/10/00/10/00/00/00/01/10/01/10/01/10/00/00/01/11/01/10/01/10/00/01/11/10/01/10/01/11/11/11/10/01/10/01/10/01/1
chr2L10477673.AC.PASSAC=61GT0/00/00/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/00/00/01/10/00/01/01/10/00/00/00/00/00/00/01/11/11/10/01/11/10/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/00/00/01/10/00/01/11/11/10/00/00/00/00/00/01/10/00/00/00/01/11/10/00/00/00/01/11/10/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/10/00/00/01/10/00/00/00/00/00/00/00/00/00/10/00/01/10/00/00/00/01/10/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/11/11/10/01/11/11/10/01/10/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/00/01/10/01/10/00/00/01/10/01/10/01/10/00/01/11/10/01/10/01/11/10/00/00/01/10/01/10/01/0
chr2L10477673.AATATACAAATC,ATATATACAAATC.PASSAC=17,7GT0/01/10/00/00/01/10/00/00/00/01/00/00/00/00/00/00/00/00/20/00/00/01/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/00/00/00/00/00/00/00/00/00/00/00/02/10/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/02/10/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/20/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/0
chr2L10477521.GA.PASSAC=61GT0/01/10/00/00/01/10/00/00/00/01/10/01/10/00/00/00/00/01/00/01/10/01/01/01/11/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/01/11/10/00/00/10/00/00/01/11/00/00/00/01/10/00/00/01/11/10/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/01/00/00/01/00/01/10/01/10/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/00/00/00/01/10/01/11/10/00/01/10/00/00/00/01/11/11/10/01/11/11/10/01/11/10/00/00/00/01/00/00/00/00/00/01/10/00/10/00/00/00/01/10/01/10/01/10/00/00/00/00/11/10/00/00/00/01/11/10/00/01/11/11/11/10/00/00/00/01/10/00/1
chr2L10477687.CT.PASSAC=104GT0/01/10/00/01/11/10/00/01/10/01/11/11/10/00/00/00/00/00/01/01/11/11/01/11/11/00/00/00/01/10/00/01/11/11/10/01/11/10/00/00/00/00/01/11/11/10/01/11/10/01/11/11/01/00/00/01/11/10/01/11/11/10/00/00/00/00/00/01/10/00/00/10/01/11/11/00/00/01/11/11/11/11/00/00/01/10/00/01/10/01/10/01/10/00/01/00/01/10/00/01/11/10/00/00/00/00/11/10/01/01/10/00/00/00/01/01/10/00/01/11/10/00/01/10/00/00/11/11/10/00/01/11/11/10/01/10/01/10/01/11/10/00/01/10/00/01/10/01/11/11/10/01/11/11/10/01/11/10/00/00/00/01/10/01/11/10/00/01/10/00/10/00/00/00/01/10/01/10/01/10/00/01/11/11/01/10/01/10/00/01/11/10/01/10/01/11/11/11/10/01/10/01/10/01/1
chr2L10477395.TC.PASSAC=109GT0/01/10/00/01/11/10/00/01/10/01/10/01/10/00/00/00/00/01/01/01/11/11/01/01/11/00/00/00/01/10/00/00/01/11/10/01/11/10/00/00/01/10/01/11/11/10/01/11/10/01/11/11/01/00/00/01/11/10/01/11/11/10/00/00/01/10/00/00/00/01/11/00/01/11/10/10/00/01/11/11/11/11/10/00/01/11/10/01/10/01/10/01/10/00/01/00/01/10/01/11/11/10/00/00/00/00/11/10/01/01/10/01/11/10/00/11/10/00/01/11/10/00/00/00/00/01/01/11/10/00/00/01/11/10/01/10/01/10/01/11/10/00/01/10/00/01/10/01/11/11/10/01/11/11/10/01/11/10/00/00/00/01/10/01/11/10/01/11/10/00/10/00/00/00/01/10/01/10/01/10/00/01/11/11/01/10/01/10/01/01/11/10/01/10/01/11/11/11/10/01/10/01/10/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L10477015CATTTCGAAAACGGTTTCGAGTGGCTTTGAAAAACCAGTAAGTTCCGTGCA
chr2L10477673ATATCAAGATATCATACAATATATAATTACATATGATCCGCATTGTTTGCTDmelanogaster-FlyFactorSurvey-bab1_SANGER_5_FBgn0004870
chr2L10477673ATATCAAGATATCATACAATATATAATTACATATGATCCGCATTGTTTGCTDmelanogaster-FlyFactorSurvey-bab1_SANGER_5_FBgn0004870 , Dmelanogaster-JASPAR_CORE-Cf2_II-MA0015.1
chr2L10477521TCGGATGGCAATCTCCATGATCGGGAAGATTCCCCCGAATGCGTGTGGTGTDmelanogaster-FlyFactorSurvey-Dip3_SANGER_5_FBgn0040465 , Dmelanogaster-FlyFactorSurvey-NFAT_SANGER_5_FBgn0030505
chr2L10477687TACAATATATAATTACATATGATCCGCATTGTTTGCTGAGTATACCTTGTG
chr2L10477395TCGTGGCTGTTGAAAATGGAGAGTTCCAAACTCTTGAGAAATGCACAAACC